STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA90014.1Hypothetical protein. (409 aa)    
Predicted Functional Partners:
SFA98207.1
Hypothetical protein.
0.955
SFA85838.1
His Kinase A (phospho-acceptor) domain-containing protein.
 0.945
SFB08023.1
PAS domain S-box-containing protein.
 0.872
SFB02005.1
Two-component system, OmpR family, phosphate regulon response regulator OmpR.
 
 0.857
SFA98154.1
Two-component system, OmpR family, phosphate regulon response regulator PhoB.
 
 0.838
SFA98341.1
Adenylate cyclase.
  
 0.822
SFB13140.1
Two-component system, OmpR family, response regulator ChvI.
 
 0.807
SFA90289.1
Two component transcriptional regulator, winged helix family.
 
 0.796
SFA96664.1
Two-component system, OmpR family, response regulator.
 
 0.784
SFA98304.1
PAS domain S-box-containing protein.
  
 0.777
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.