STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA95709.1Carbohydrate ABC transporter membrane protein 1, CUT1 family. (331 aa)    
Predicted Functional Partners:
SFA95719.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.999
SFA95730.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
 
  0.997
SFA95699.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
  
  0.912
SFA95739.1
Heparinase II/III-like protein.
 
    0.903
SFA74151.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.893
SFB01077.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.870
SFA95681.1
Putative efflux protein, MATE family.
 
     0.840
SFA77645.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.684
SFB04865.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.678
SFB17298.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
 0.678
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.