STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA95841.1Cupin domain-containing protein. (103 aa)    
Predicted Functional Partners:
SFA95826.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.846
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.756
SFA95809.1
Transcriptional regulator, GntR family.
 
     0.659
uxaC
Glucuronate isomerase.
 
     0.627
SFA95790.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.622
SFA97009.1
Transcriptional regulator, XRE family with cupin sensor; Manually curated.
  
  0.538
SFB01107.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
   
 0.516
SFA70372.1
Uncharacterized peroxidase-related enzyme.
 
 
  0.503
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
     0.494
SFA76235.1
Putative redox protein.
 
    0.419
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.