STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA95889.1Cu+-exporting ATPase. (807 aa)    
Predicted Functional Partners:
SFA71565.1
Assimilatory nitrite reductase (NAD(P)H) small subunit.
   
  0.927
SFB11320.1
Hypothetical protein.
   
  0.927
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.903
SFA95898.1
Cu(I)-responsive transcriptional regulator.
  
 0.866
SFA95881.1
Transcriptional regulator, ArsR family; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.865
SFA98341.1
Adenylate cyclase.
    
 0.826
SFA85838.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 
 0.781
SFA98871.1
ferredoxin--NADP+ reductase.
  
 
 0.699
SFA75373.1
Hypothetical glycoside hydrolase 5.
   
 
  0.668
SFA68718.1
Uncharacterized conserved protein.
 
   
 0.654
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.