STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA96179.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (112 aa)    
Predicted Functional Partners:
cysC
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
    
 0.946
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.937
SFA77821.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.908
SFA94593.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
  
 
 0.888
SFA91288.1
4Fe-4S dicluster domain-containing protein.
    
 0.810
SFA96976.1
FAD/FMN-containing dehydrogenase.
  
 
  0.792
SFA96192.1
Heat shock protein Hsp15.
       0.769
SFA99701.1
Dihydrolipoamide dehydrogenase.
  
 
  0.751
SFA97278.1
2,4-dienoyl-CoA reductase (NADPH2).
  
 0.703
SFA96200.1
ATP-dependent RNA helicase SUPV3L1/SUV3.
       0.699
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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