STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA98735.1FeS assembly SUF system protein. (120 aa)    
Predicted Functional Partners:
SFB14497.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 0.969
SFB14551.1
Fe-S cluster assembly ATP-binding protein.
  
 0.965
SFB14593.1
Iron-regulated ABC transporter membrane component SufB.
   
 0.956
SFB14537.1
Fe-S cluster assembly protein SufD.
   
 0.919
SFA79687.1
NifU homolog involved in Fe-S cluster formation.
 
    0.862
SFA98871.1
ferredoxin--NADP+ reductase.
  
 
 0.651
SFA98766.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
  
    0.650
SFA98746.1
Hypothetical protein.
       0.638
SFA97809.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.581
SFA98724.1
Serine/threonine protein kinase.
       0.578
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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