STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB01441.1PRC-barrel domain-containing protein. (218 aa)    
Predicted Functional Partners:
SFA96030.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.539
SFB01452.1
Hypothetical protein.
       0.506
SFB01463.1
Coenzyme Q-binding protein COQ10.
       0.506
SFB05894.1
Outer membrane protein OmpA.
  
     0.482
SFB11175.1
Uncharacterized membrane protein YtjA, UPF0391 family; Manually curated.
  
     0.454
SFB11158.1
Bacteriophytochrome (light-regulated signal transduction histidine kinase).
  
     0.435
SFB12055.1
Phospholipase D Active site motif-containing protein.
  
    0.418
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.