STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07493.1Hypothetical protein; Manually curated. (119 aa)    
Predicted Functional Partners:
SFB07477.1
Putative glutathione S-transferase.
       0.602
SFA85284.1
Uncharacterized alpha/beta hydrolase domain.
  
     0.565
SFA72109.1
Hypothetical protein.
  
     0.541
SFB00891.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.537
SFA77074.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.500
SFA79143.1
Hypothetical protein.
  
    0.498
SFA97598.1
Hypothetical protein.
  
     0.476
SFB04711.1
Putative membrane protein.
  
     0.464
SFA79941.1
Hypothetical protein.
  
     0.453
SFB11932.1
Lipopolysaccharide export system protein LptC.
  
     0.438
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.