STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07725.1Protocatechuate 3,4-dioxygenase, alpha subunit. (201 aa)    
Predicted Functional Partners:
SFB07702.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.998
SFB07739.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
0.998
SFA68902.1
Protocatechuate 3,4-dioxygenase beta subunit.
 
0.995
SFA85179.1
P-hydroxybenzoate 3-monooxygenase.
 
  
 0.992
SFB07750.1
4-carboxymuconolactone decarboxylase.
 
 
 0.983
SFA68896.1
Protocatechuate 3,4-dioxygenase alpha subunit/protocatechuate 3,4-dioxygenase beta subunit.
 
0.981
SFA88517.1
3-oxoadipate enol-lactonase.
 
  
 0.904
SFB07713.1
Uncharacterized conserved protein, DUF849 family.
 
     0.823
SFB07762.1
LysR family transcriptional regulator, pca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
 
     0.800
SFA70433.1
Catechol 1,2-dioxygenase.
  
   
 0.688
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.