STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB08183.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
SFB08214.1
Heavy-metal resistance.
 
     0.918
SFB08168.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.856
SFB08159.1
Hypothetical protein.
       0.596
SFA98021.1
Hemerythrin HHE cation binding domain-containing protein.
  
     0.556
SFB08134.1
Uncharacterized conserved protein, DUF983 family.
       0.513
SFB08114.1
8-oxo-dGTP pyrophosphatase MutT, NUDIX family.
       0.507
SFA77481.1
LuxR family transcriptional regulator.
  
     0.495
SFA97887.1
Hypothetical protein.
  
     0.423
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.