STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB08531.1L-ribulokinase. (524 aa)    
Predicted Functional Partners:
SFB08517.1
L-ribulose 5-phosphate 4-epimerase.
 
 
 0.992
SFA77703.1
Ribitol 2-dehydrogenase.
    
  0.901
SFA86071.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
  
  0.884
SFB04938.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.878
SFB06994.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
  
 0.840
SFB08503.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
    0.665
xylB
Xylulokinase.
 
 
0.647
xylB-2
Xylulokinase.
 
 
0.646
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
  
   
 0.641
SFA95881.1
Transcriptional regulator, ArsR family; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
  0.542
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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