STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB10546.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (329 aa)    
Predicted Functional Partners:
SFB10523.1
TRAP transporter, DctM subunit.
 
 
  0.990
SFB10532.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.944
SFB13029.1
TRAP transporter, DctM subunit.
  
    0.704
SFA68929.1
TRAP transporter, DctM subunit.
  
    0.699
SFB10554.1
LysR family transcriptional regulator, nitrogen assimilation regulatory protein.
 
     0.697
SFA95775.1
TRAP transporter, DctM subunit.
  
    0.653
SFB17013.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.634
SFB17023.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
     0.626
SFA80562.1
TRAP transporter, DctM subunit.
  
    0.597
SFA73817.1
TRAP transporter, DctM subunit.
  
    0.584
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.