STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB11015.1Trk system potassium uptake protein TrkH. (483 aa)    
Predicted Functional Partners:
SFB11008.1
Trk system potassium uptake protein TrkA.
 
 
 0.993
SFA88667.1
Trk system potassium uptake protein TrkA.
 
 
 0.974
SFB10998.1
Small-conductance mechanosensitive channel.
  
    0.572
SFA97642.1
Kef-type potassium/proton antiporter, CPA2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
   
 
 0.484
SFB11024.1
3',5'-cyclic AMP phosphodiesterase CpdA.
       0.463
SFA96754.1
Multisubunit potassium/proton antiporter, PhaA subunit /multisubunit potassium/proton antiporter, PhaB subunit.
     
 0.443
SFA90381.1
Cell division transport system ATP-binding protein.
   
  
 0.409
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.