STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB11546.1L,D-transpeptidase catalytic domain. (200 aa)    
Predicted Functional Partners:
SFB11538.1
Cysteine-rich secretory protein family protein.
 
     0.808
SFB11527.1
L,D-transpeptidase catalytic domain.
 
  
 0.776
SFA98254.1
Penicillin-insensitive murein endopeptidase.
  
     0.630
SFA86098.1
Hypothetical protein.
  
     0.618
SFA76350.1
Hypothetical protein.
  
    0.550
SFA70172.1
Murein L,D-transpeptidase YcbB/YkuD.
 
  
 0.525
SFB00131.1
Hypothetical protein.
  
     0.515
SFB11555.1
Hypothetical protein.
       0.480
SFA70184.1
Uncharacterized conserved protein YcbK, DUF882 family.
 
     0.477
SFB18150.1
Membrane associated serine protease, rhomboid family.
  
     0.476
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.