STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB12863.1Citrate/tricarballylate utilization protein. (357 aa)    
Predicted Functional Partners:
SFB12876.1
Tricarballylate dehydrogenase.
 0.999
SFA94593.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
   
 0.986
SFB17811.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.950
SFA90116.1
Electron transfer flavoprotein beta subunit.
   
 
 0.949
SFA72096.1
NADH dehydrogenase subunit E.
   
 0.936
SFA90245.1
Glutamate synthase (NADPH) large subunit.
  
 
  0.922
SFA77821.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.918
SFA69011.1
Phosphate acetyltransferase.
  
 
 0.892
cysC
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
    
  0.861
SFA71580.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 0.855
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.