STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB13388.1Luciferase-type oxidoreductase, BA3436 family. (323 aa)    
Predicted Functional Partners:
SFA90666.1
Enterobactin synthetase component F.
   
 0.815
SFB13394.1
Aldo/keto reductase.
  
    0.781
SFA87578.1
Dihydrouracil dehydrogenase (NAD+).
    
  0.738
SFB13380.1
MFS transporter, DHA1 family, inner membrane transport protein.
 
     0.662
SFB13505.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.653
SFA84717.1
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.649
SFA68803.1
NAD(P)H-dependent FMN reductase.
  
 0.593
SFB13371.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.495
SFA69985.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
   
 
  0.474
SFB06932.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
   
 
  0.474
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.