STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB15691.1Hypothetical protein. (225 aa)    
Predicted Functional Partners:
SFB15704.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
     0.862
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.753
SFA89288.1
Hypothetical protein.
  
     0.718
SFA96744.1
Hypothetical protein.
  
     0.707
SFA80174.1
DnaJ domain-containing protein.
  
     0.655
SFA71684.1
Membrane protein required for colicin V production.
 
     0.604
SFB00131.1
Hypothetical protein.
  
     0.568
SFA97830.1
Hypothetical protein.
  
     0.547
SFA77074.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
    0.529
SFA86444.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.