STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB16893.1Predicted amidohydrolase. (308 aa)    
Predicted Functional Partners:
SFB16902.1
Dihydropyrimidinase.
 
 
  0.940
SFB16911.1
Asp/Glu/hydantoin racemase.
 
     0.931
SFA75531.1
Allantoin racemase.
     0.923
SFA90245.1
Glutamate synthase (NADPH) large subunit.
    
  0.870
SFB16925.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.868
SFA70583.1
Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.840
SFA88814.1
Aldehyde dehydrogenase (NAD+).
   
  0.802
SFB16875.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
     0.792
SFB16933.1
UDP-glucose 4-epimerase.
  
 
  0.792
SFB16882.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
     0.787
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
Server load: low (22%) [HD]