STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB17161.1N-methylhydantoinase B. (662 aa)    
Predicted Functional Partners:
SFB17169.1
N-methylhydantoinase A.
 0.999
SFA85212.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.856
SFB17152.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.809
SFB17175.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.775
SFB17134.1
Putative spermidine/putrescine transport system permease protein.
 
     0.606
SFB17118.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
 
     0.598
SFB17142.1
Putative spermidine/putrescine transport system permease protein.
       0.546
SFB17183.1
Transcriptional regulator, LacI family.
       0.532
SFB17127.1
Selenocysteine lyase/Cysteine desulfurase.
       0.531
SFA70583.1
Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
  0.509
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.