STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB17274.1Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains. (222 aa)    
Predicted Functional Partners:
SFB17267.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
   0.983
SFB17281.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; Manually curated.
 
   0.983
SFA70310.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
   0.940
SFB17254.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.834
SFB17230.1
Acetamidase/formamidase.
 
     0.819
SFB17244.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
     0.782
SFA70241.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
  
   0.756
SFB17261.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.753
SFA70266.1
Peptide/nickel transport system substrate-binding protein/oligopeptide transport system substrate-binding protein.
  
     0.734
SFA70259.1
Amidase.
 
     0.651
Your Current Organism:
Poseidonocella pacifica
NCBI taxonomy Id: 871651
Other names: DSM 29316, JCM 17310, KCTC 23693, KMM 9010, NRIC 0794, P. pacifica, Poseidonocella pacifica Romanenko et al. 2012, alpha proteobacterium KMM 9010
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.