STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR13289.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
SFR06146.1
Acyl transferase domain-containing protein.
  
 0.993
SFR06129.1
Acyl transferase domain-containing protein.
  
 0.977
SFR13251.1
Gluconolactonase.
 
 
   0.936
SFQ96115.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
   0.931
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.913
SFR13262.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.912
SFR13277.1
Glycine/D-amino acid oxidase.
 
    0.911
SFR13284.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  0.902
SFR12498.1
Enterobactin synthetase component F.
  
 0.902
SFR13273.1
Thioredoxin reductase.
 
     0.882
Your Current Organism:
Poseidonocella sedimentorum
NCBI taxonomy Id: 871652
Other names: JCM 17311, KCTC 23692, KMM 9023, NRIC 0796, P. sedimentorum, Poseidonocella sedimentorum Romanenko et al. 2012, alpha proteobacterium KMM 9023
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.