STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS50013.1Glycogen debranching enzyme (alpha-1,6-glucosidase). (714 aa)    
Predicted Functional Partners:
SFS50005.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 0.954
SFS30418.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 0.607
SFS70982.1
Alpha-1,6-mannosyltransferase.
  
 0.607
SFS81278.1
Beta-glucosidase.
    
 0.502
SFS44746.1
Arylsulfatase A.
    
  0.481
SFS30952.1
Trehalose and maltose hydrolase (possible phosphorylase).
 
  
 0.480
SFS29947.1
Glycosidase.
 
 
 0.476
Your Current Organism:
Brevundimonas viscosa
NCBI taxonomy Id: 871741
Other names: B. viscosa, Brevundimonas sp. F3, Brevundimonas viscosa Wang et al. 2012, CGMCC 1.10683, JCM 17426, strain F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.