STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA67644.1PFAM: Spore cortex protein YabQ (Spore_YabQ). (169 aa)    
Predicted Functional Partners:
AGA67643.1
Sporulation protein YabP; PFAM: YabP family.
  
  
 0.961
AGA70770.1
ABC-type sugar transport system, periplasmic component.
  
     0.772
AGA70231.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain.
  
     0.768
AGA69528.1
Hypothetical protein.
  
     0.767
AGA70437.1
Hypothetical protein.
  
     0.767
AGA69883.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif.
  
     0.763
AGA70747.1
Squalene cyclase.
  
     0.763
AGA67648.1
PFAM: Stage II sporulation protein E (SpoIIE).
 
     0.762
AGA69871.1
Competence protein A.
  
     0.759
AGA70616.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2.
  
     0.759
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.