Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA68020.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
AGA68022.1
Hypothetical protein.
 
     0.890
AGA68021.1
Putative domain HDIG-containing protein; PFAM: HD domain.
 
     0.819
AGA69488.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
  
     0.639
AGA67600.1
Spore germination protein, amino acid permease; PFAM: Spore germination protein.
  
     0.612
AGA70425.1
PFAM: Membrane protein of unknown function.
  
     0.596
AGA69487.1
PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457).
  
     0.588
AGA69497.1
PFAM: Small, acid-soluble spore proteins, alpha/beta type.
  
     0.585
AGA68145.1
Hypothetical protein.
  
     0.575
AGA70483.1
Mn-containing catalase; PFAM: Rubrerythrin; LysM domain.
  
     0.563
AGA70782.1
Hypothetical protein.
  
     0.562
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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