Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA68158.1PFAM: Spore germination B3/ GerAC like, C-terminal. (362 aa)    
Predicted Functional Partners:
AGA68159.1
PFAM: Spore germination protein.
 
  
 0.957
AGA68160.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.941
AGA69712.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.512
AGA69713.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.503
AGA67599.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.480
AGA70025.1
PFAM: Small, acid-soluble spore proteins, alpha/beta type.
  
     0.465
AGA67600.1
Spore germination protein, amino acid permease; PFAM: Spore germination protein.
 
  
 0.448
AGA69481.1
Small primase-like protein with Toprim domain; PFAM: Toprim domain.
  
     0.425
AGA67907.1
Membrane protein involved in cytochrome C biogenesis; PFAM: Protein of unknown function (DUF1453).
  
     0.400
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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