Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA68185.1NAD(P)H-nitrite reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase. (411 aa)    
Predicted Functional Partners:
AGA69545.1
Hydrid cluster protein-associated redox disulfide domain protein; PFAM: Domain of unknown function (DUF1858); Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: hybrid cluster protein-associated redox disulfide domain.
 
     0.926
AGA68697.1
NAD-dependent formate dehydrogenase catalytic subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molybdopterin oxidoreductase Fe4S4 domain; Contains selenocysteine; manually curated.
 
  
 0.908
napA
Anaerobic dehydrogenase, typically selenocysteine-containing; Catalytic subunit of the nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
  
 0.903
AGA68471.1
Putative flavoprotein; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin.
 
  
 0.894
AGA68183.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S binding domain.
 
 
 
 0.874
AGA68184.1
Carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane/CO dehydrogenase family.
  
  
 0.843
AGA69590.1
PFAM: Rubredoxin.
  
 
 0.812
AGA68132.1
Hypothetical protein.
 
     0.787
AGA69743.1
PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase; uroporphyrinogen-III synthase.
  
  
 0.731
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.672
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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