STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA68198.1Hypothetical protein; Manually curated. (151 aa)    
Predicted Functional Partners:
AGA68199.1
Protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B.
 
   
 0.950
AGA68197.1
PFAM: Benzoate membrane transport protein.
 
     0.697
AGA70894.1
PFAM: Predicted membrane protein (DUF2232).
  
     0.672
AGA68196.1
Hypothetical protein.
 
     0.655
AGA70030.1
NHLM bacteriocin system secretion protein.
  
     0.646
AGA70518.1
PFAM: Tripartite tricarboxylate transporter TctB family.
  
     0.627
AGA68644.1
Hypothetical protein.
  
     0.619
AGA68200.1
Signal transduction histidine kinase, nitrogen specific; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold.
 
     0.609
AGA68322.1
PFAM: Tripartite tricarboxylate transporter TctB family.
  
     0.599
AGA67598.1
PFAM: Ubiquinone biosynthesis protein COQ7.
  
     0.593
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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