STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA68262.1Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (401 aa)    
Predicted Functional Partners:
AGA70556.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.699
AGA70313.1
Hypothetical protein.
  
     0.622
AGA68389.1
Hypothetical protein.
  
     0.495
AGA68110.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
  
     0.470
AGA68261.1
Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain.
     
 0.446
AGA68263.1
Hypothetical protein.
       0.415
AGA68426.1
PFAM: Predicted membrane protein (DUF2207).
  
    0.410
hypA
Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.406
AGA68438.1
PFAM: Helix-turn-helix.
  
     0.405
AGA68562.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2.
  
     0.403
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.