STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA68317.1Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel. (278 aa)    
Predicted Functional Partners:
AGA68315.1
PFAM: Pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.
 
     0.806
AGA68316.1
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase.
 
     0.805
AGA68318.1
PFAM: Dehydratase family; Belongs to the IlvD/Edd family.
  
  
 0.787
AGA68457.1
PFAM: Xylose isomerase-like TIM barrel; Belongs to the hyi family.
 
   
 0.658
AGA68319.1
Hypothetical protein; PFAM: Tripartite tricarboxylate transporter family receptor.
 
     0.601
AGA68322.1
PFAM: Tripartite tricarboxylate transporter TctB family.
 
     0.540
AGA68490.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
     0.512
AGA68326.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
 
  
 0.439
AGA68324.1
Dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit; PFAM: 4Fe-4S binding domain.
 
     0.438
AGA68320.1
Dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit; PFAM: 4Fe-4S binding domain.
 
     0.437
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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