STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA68332.1Response regulator with putative antiterminator output domain; PFAM: Response regulator receiver domain; ANTAR domain. (190 aa)    
Predicted Functional Partners:
AGA68331.1
PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain.
  
  
 0.800
AGA70031.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Receptor family ligand binding region.
  
 
 0.640
AGA70449.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Receptor family ligand binding region.
  
 
 0.640
AGA70889.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Receptor family ligand binding region.
  
 
 0.640
ispH
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
    0.542
AGA68213.1
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
  
  
 0.476
AGA68369.1
PFAM: Ammonium Transporter Family; TC 1.A.11.
  
  
 0.475
AGA68334.1
Hypothetical protein.
     
 0.472
AGA68333.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
       0.468
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
    0.447
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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