Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA68406.1PFAM: Protein of unknown function (DUF3298). (303 aa)    
Predicted Functional Partners:
AGA68405.1
RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.929
AGA68404.1
RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.581
AGA68407.1
PFAM: Major Facilitator Superfamily; manually curated.
 
     0.561
AGA68953.1
Putative transcriptional regulator; PFAM: Penicillinase repressor.
  
     0.560
AGA68952.1
Antirepressor regulating drug resistance protein; PFAM: BlaR1 peptidase M56.
  
     0.543
AGA68403.1
Hypothetical protein.
       0.527
AGA68237.1
Hypothetical protein.
  
     0.483
AGA70313.1
Hypothetical protein.
  
     0.449
AGA68683.1
Putative membrane protein; PFAM: Uncharacterized BCR, YitT family COG1284; manually curated.
  
     0.419
AGA69470.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
     0.407
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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