Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA68438.1PFAM: Helix-turn-helix. (111 aa)    
Predicted Functional Partners:
AGA70616.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2.
  
     0.702
AGA68562.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2.
  
     0.692
AGA68439.1
PFAM: Protein of unknown function (DUF1538).
  
    0.681
AGA68440.1
PFAM: Nitrogen regulatory protein P-II.
       0.664
AGA69062.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2.
  
     0.594
AGA69388.1
PFAM: Acetyltransferase (GNAT) family.
  
    0.591
AGA68877.1
Hypothetical protein.
  
     0.563
AGA69439.1
PFAM: Domain of unknown function (DUF1836).
  
  
 0.563
AGA70613.1
Cell wall-binding protein; PFAM: Putative cell wall binding repeat 2; Fibronectin type III domain.
  
     0.548
AGA70036.1
Hypothetical protein; Manually curated.
  
 
 0.544
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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