STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA68465.1Uncharacterized protein, possibly involved in glyoxylate utilization; PFAM: Cupin domain. (253 aa)    
Predicted Functional Partners:
AGA68462.1
Amidase, hydantoinase/carbamoylase family; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain.
 
 0.976
AGA68464.1
PFAM: Ureidoglycolate hydrolase.
    
 0.951
AGA68459.1
PFAM: Permease for cytosine/purines, uracil, thiamine, allantoin.
 
     0.754
AGA68466.1
PFAM: Purine catabolism regulatory protein-like family.
 
     0.720
AGA68461.1
Allantoinase; PFAM: Amidohydrolase family.
 
  
 0.710
allB
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
  
 0.688
AGA68313.1
PFAM: Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
 0.502
AGA68467.1
PFAM: Nitroreductase family.
       0.456
AGA70516.1
PFAM: Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
 0.448
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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