STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69165.1ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component. (274 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.999
AGA69166.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 0.999
AGA69167.1
Spermidine/putrescine-binding periplasmic protein; PFAM: Bacterial extracellular solute-binding protein.
 
 
 0.999
AGA68974.1
PFAM: ABC transporter; CBS domain; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit.
  
 
 0.859
AGA69168.1
Hypothetical protein.
       0.694
AGA69163.1
Putative membrane protein; PFAM: Domain of unknown function (DUF307).
       0.507
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
  
  
 0.462
AGA69169.1
PFAM: Transposase DDE domain; Transposase domain (DUF772).
       0.445
AGA67658.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).
     
 0.411
AGA68357.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
   
 0.400
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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