Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGA69178.1PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam). (636 aa)    
Predicted Functional Partners:
AGA69179.1
PFAM: AlwI restriction endonuclease.
 
   
 0.952
AGA69177.1
Putative transcriptional regulator.
       0.715
AGA69180.1
Hypothetical protein.
       0.645
AGA69182.1
Hypothetical protein.
  
    0.559
AGA68851.1
PFAM: C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.541
AGA69209.1
PFAM: C-5 cytosine-specific DNA methylase; manually curated; non-canonical start codon; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.541
AGA69181.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
       0.527
AGA69183.1
PFAM: ADP-ribosylglycohydrolase.
       0.527
AGA69186.1
Site-specific DNA methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase.
 
   
0.470
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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