STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69425.1Putative membrane protein; PFAM: GPR1/FUN34/yaaH family. (214 aa)    
Predicted Functional Partners:
AGA68644.1
Hypothetical protein.
  
     0.678
AGA68877.1
Hypothetical protein.
  
     0.576
AGA69421.1
Putative membrane protein; PFAM: Bacterial protein of unknown function (DUF939).
 
     0.573
AGA69424.1
PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; TIGRFAM: butyryl-CoA:acetate CoA-transferase.
       0.543
AGA70557.1
Ig-like domain-containing surface protein; PFAM: Bacterial Ig-like domain (group 2).
  
     0.524
AGA69316.1
PFAM: Protein of unknown function (DUF964); Belongs to the UPF0342 family.
  
     0.506
AGA70387.1
PFAM: Protein involved in formate dehydrogenase formation.
  
     0.503
AGA69499.1
Hypothetical protein.
  
     0.491
AGA69422.1
enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.478
AGA69423.1
acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
       0.477
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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