Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA69434.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
AGA68763.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
     0.502
AGA67728.1
Hypothetical protein.
  
     0.496
AGA68324.1
Dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit; PFAM: 4Fe-4S binding domain.
  
     0.484
AGA67598.1
PFAM: Ubiquinone biosynthesis protein COQ7.
  
     0.460
rsgA-2
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.445
AGA68322.1
PFAM: Tripartite tricarboxylate transporter TctB family.
  
     0.444
AGA69958.1
PFAM: Doubled CXXCH motif (Paired_CXXCH_1).
  
     0.417
AGA67729.1
Parallel beta-helix repeat (two copies); PFAM: Periplasmic copper-binding protein (NosD).
  
     0.412
AGA68196.1
Hypothetical protein.
 
     0.410
AGA68490.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
     0.405
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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