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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA69461.1PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (260 aa)    
Predicted Functional Partners:
AGA69460.1
Putative cobalamin binding protein; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.
 
     0.821
AGA69463.1
PFAM: Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
     0.806
AGA69459.1
ATP-dependent DNA helicase, RecQ-like protein; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family.
       0.782
AGA68357.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
 
  
 0.594
AGA68358.1
Putative transcriptional regulator; PFAM: Cupin domain.
 
  
 0.593
AGA69458.1
PFAM: Major Facilitator Superfamily.
       0.548
AGA68931.1
Putative transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix.
  
  
 0.528
AGA69462.1
Hypothetical protein.
       0.519
AGA68197.1
PFAM: Benzoate membrane transport protein.
  
   
 0.468
AGA69457.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
       0.402
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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