STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
AGA69465.1Putative peptidoglycan-binding domain-containing protein; PFAM: Putative peptidoglycan binding domain; LysM domain. (380 aa)    
Predicted Functional Partners:
AGA69689.1
Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family.
   
 0.851
AGA68648.1
Cell wall-associated hydrolase, invasion-associated protein; PFAM: NlpC/P60 family.
   
 0.693
AGA69466.1
Oligoketide cyclase/lipid transport protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
       0.569
AGA69467.1
PFAM: Protein of unknown function (DUF454).
       0.568
AGA69468.1
Glutaredoxin family protein, arsenate reductase; PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family; Belongs to the ArsC family.
       0.564
AGA69439.1
PFAM: Domain of unknown function (DUF1836).
  
     0.441
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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