STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69588.1Superfamily II RNA helicase; PFAM: DEAD/DEAH box helicase; DSHCT (NUC185) domain. (753 aa)    
Predicted Functional Partners:
AGA69589.1
Hypothetical protein.
       0.613
AGA69528.1
Hypothetical protein.
 
     0.592
AGA70532.1
PFAM: Protein of unknown function (DUF964); Belongs to the UPF0342 family.
  
     0.578
AGA70278.1
Flagellar basal body-associated protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.573
AGA70770.1
ABC-type sugar transport system, periplasmic component.
  
     0.544
AGA69587.1
Hypothetical protein.
       0.530
AGA70214.1
Cell division septal protein; Essential cell division protein.
  
     0.527
AGA70895.1
Hypothetical protein.
  
     0.496
AGA69075.1
tRNA nucleotidyltransferase/poly(A) polymerase; PFAM: Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.490
AGA70437.1
Hypothetical protein.
  
     0.490
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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