STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69629.1PFAM: ACT domain; Protein of unknown function (DUF3388). (245 aa)    
Predicted Functional Partners:
AGA69628.1
Hypothetical protein.
  
    0.894
AGA69630.1
PFAM: Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase.
       0.794
AGA69481.1
Small primase-like protein with Toprim domain; PFAM: Toprim domain.
  
     0.747
AGA67907.1
Membrane protein involved in cytochrome C biogenesis; PFAM: Protein of unknown function (DUF1453).
  
     0.746
AGA67605.1
PFAM: Protein of unknown function (DUF972).
  
     0.674
AGA69627.1
PFAM: Protein of unknown function (DUF520); Belongs to the UPF0234 family.
       0.654
AGA69631.1
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
  
    0.614
AGA70854.1
PFAM: DNA-directed RNA polymerase delta subunit.
  
     0.610
AGA68881.1
Putative transcription factor, MBF1 like protein; PFAM: Helix-turn-helix.
  
    0.547
cinA
PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
  
    0.543
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.