STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA69711.1Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family. (384 aa)    
Predicted Functional Partners:
AGA69713.1
PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease).
 
  
 0.968
AGA69712.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.948
AGA67599.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.823
AGA68160.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.800
AGA67600.1
Spore germination protein, amino acid permease; PFAM: Spore germination protein.
 
  
 0.789
AGA69794.1
PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ.
  
     0.750
AGA70857.1
Hypothetical protein.
 
   
 0.746
AGA70130.1
Hypothetical protein; PFAM: Nucleoside recognition.
  
   
 0.716
AGA69834.1
PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B.
  
    0.695
AGA69861.1
PFAM: Stage III sporulation protein AE (spore_III_AE).
  
     0.675
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.