STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA69713.1PFAM: Spore germination protein; TIGRFAM: spore germination protein (amino acid permease). (366 aa)    
Predicted Functional Partners:
AGA69711.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.968
AGA69712.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.951
AGA67601.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal.
 
  
 0.803
AGA67599.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.789
AGA68160.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.720
AGA70130.1
Hypothetical protein; PFAM: Nucleoside recognition.
  
   
 0.710
AGA69861.1
PFAM: Stage III sporulation protein AE (spore_III_AE).
  
     0.682
AGA70907.1
Putative sporulation protein YyaC; PFAM: Protein of unknown function (DUF1256).
  
    0.669
AGA70529.1
PFAM: Stage II sporulation protein R (spore_II_R).
 
   
 0.666
AGA69794.1
PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ.
  
    0.649
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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