Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA69729.1HD-GYP domain-containing protein; PFAM: HD domain. (356 aa)    
Predicted Functional Partners:
AGA70354.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: FIST C domain; GGDEF domain.
 
 0.840
AGA70237.1
HD-GYP domain-containing protein; PFAM: HD domain.
  
     0.773
AGA68972.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
   
 0.656
AGA68310.1
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; PFAM: GGDEF domain.
 
   0.607
AGA70686.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: GGDEF domain; manually curated.
 
 0.547
AGA69001.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
   
 0.527
AGA69040.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
   0.522
AGA68673.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: GGDEF domain.
 
   0.520
AGA70678.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: GGDEF domain.
 
   0.520
AGA68656.1
Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: GGDEF domain.
 
   0.498
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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