STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69749.1Formate-dependent nitrite reductase, membrane component; PFAM: Polysulphide reductase, NrfD. (315 aa)    
Predicted Functional Partners:
AGA68767.1
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit.
 
     0.769
AGA69456.1
Hypothetical protein; PFAM: Radical SAM superfamily.
  
     0.728
AGA69750.1
Fe-S-cluster-containing hydrogenase subunit; TIGRFAM: DMSO reductase, iron-sulfur subunit.
  
    0.717
AGA68484.1
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit.
 
     0.715
AGA68764.1
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.702
AGA68490.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
     0.691
AGA70350.1
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit.
 
     0.682
AGA70174.1
PFAM: Class III cytochrome C family.
  
     0.681
AGA68483.1
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.671
AGA68768.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
  
     0.668
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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