STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69794.1PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ. (148 aa)    
Predicted Functional Partners:
AGA69795.1
PFAM: Protein of unknown function (DUF2953).
  
    0.799
AGA70808.1
Sporulation transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D.
  
  
 0.779
AGA70208.1
Sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain.
  
  
 0.763
AGA69712.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
  
     0.752
AGA69711.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.750
AGA67639.1
Transcriptional regulator, AbrB family; PFAM: SpoVT / AbrB like domain.
  
   
 0.745
AGA69862.1
PFAM: Stage III sporulation protein AC/AD protein family.
  
     0.741
AGA69632.1
Protease subunit of ATP-dependent protease; PFAM: Clp protease.
  
    0.734
AGA69861.1
PFAM: Stage III sporulation protein AE (spore_III_AE).
  
     0.731
AGA70130.1
Hypothetical protein; PFAM: Nucleoside recognition.
  
    0.731
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.