STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA69807.1PFAM: Bacillus/Clostridium GerA spore germination protein. (496 aa)    
Predicted Functional Partners:
AGA69809.1
PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
 
  
 0.955
AGA69808.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
 
   
 0.947
AGA69810.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
 
  
 0.930
AGA67643.1
Sporulation protein YabP; PFAM: YabP family.
  
   
 0.786
AGA69813.1
RNA polymerase, sigma subunit, RpoX/SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.783
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.779
AGA69806.1
Hypothetical protein; PFAM: CoA enzyme activase uncharacterised domain (DUF2229).
       0.770
AGA69758.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.768
AGA69834.1
PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B.
  
     0.768
AGA69805.1
Hypothetical protein.
       0.767
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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