STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA69864.1PFAM: Stage III sporulation protein AB (spore_III_AB). (169 aa)    
Predicted Functional Partners:
AGA69865.1
Stage III sporulation protein AA; PFAM: Type II/IV secretion system protein.
 
  
 0.996
AGA69861.1
PFAM: Stage III sporulation protein AE (spore_III_AE).
 
  
 0.984
AGA69863.1
PFAM: Stage III sporulation protein AC/AD protein family.
  
  
 0.979
AGA69862.1
PFAM: Stage III sporulation protein AC/AD protein family.
 
  
 0.978
AGA69859.1
Hypothetical protein.
 
  
 0.970
AGA69860.1
PFAM: Stage III sporulation protein AF (Spore_III_AF).
 
  
 0.962
AGA69858.1
Hypothetical protein.
 
  
 0.889
AGA69826.1
Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
  
 0.871
AGA70211.1
Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.785
AGA70401.1
PFAM: YabP family.
  
  
 0.782
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.