Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGA69913.1Hypothetical protein; PFAM: PRC-barrel domain. (164 aa)    
Predicted Functional Partners:
AGA69912.1
Hypothetical protein.
  
    0.826
AGA69795.1
PFAM: Protein of unknown function (DUF2953).
  
     0.749
AGA69577.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.742
AGA69911.1
Hypothetical protein.
       0.705
AGA67600.1
Spore germination protein, amino acid permease; PFAM: Spore germination protein.
  
     0.692
AGA67709.1
PFAM: YtxC-like family.
  
     0.628
AGA70895.1
Hypothetical protein.
  
     0.612
AGA69452.1
Hypothetical protein.
  
     0.600
AGA69860.1
PFAM: Stage III sporulation protein AF (Spore_III_AF).
  
     0.597
AGA70849.1
Hypothetical protein.
  
     0.595
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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