STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA70400.1PFAM: Putative stage IV sporulation protein YqfD. (404 aa)    
Predicted Functional Partners:
AGA70401.1
PFAM: YabP family.
 
  
 0.993
AGA70130.1
Hypothetical protein; PFAM: Nucleoside recognition.
 
   
 0.874
AGA70211.1
Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.846
AGA70424.1
PFAM: Stage II sporulation protein P (SpoIIP).
 
   
 0.832
AGA67643.1
Sporulation protein YabP; PFAM: YabP family.
 
   
 0.829
AGA70529.1
PFAM: Stage II sporulation protein R (spore_II_R).
  
  
 0.824
AGA69865.1
Stage III sporulation protein AA; PFAM: Type II/IV secretion system protein.
  
  
 0.787
AGA70808.1
Sporulation transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D.
  
   
 0.786
AGA69862.1
PFAM: Stage III sporulation protein AC/AD protein family.
  
   
 0.775
AGA70399.1
Phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH-like protein.
       0.774
Your Current Organism:
Desulfitobacterium dichloroeliminans
NCBI taxonomy Id: 871963
Other names: D. dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans DCA1, Desulfitobacterium dichloroeliminans LMG P-21439, Desulfitobacterium dichloroeliminans LMG P21439, Desulfitobacterium dichloroeliminans str. LMG P-21439, Desulfitobacterium dichloroeliminans strain LMG P-21439
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